hpcNMF Software Licensing

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Description
Installation
Usage
Contact

Description:

hpcNMF is a platform independent software package and does not require any special libraries for the deployment on desktop computers. It is compatible with Windows, Linux and Mac operating systems. However, MPI is needed for hpcNMF to be deployed on computer clusters to leverage the power of parallelized computing.

Installation:

Three executables are provided for Linux, Mac, and Windows users

Usage:

hpcNMF -i input_data_matrix

  Other options:
     -s: scheme, 'KL', 'Renyi', 'ED'
     -n: update steps, default 2000
     -c: repeats, default 20
     -k: rank range, default 2-2
     -t: clustering target, default 'PATTERN (H matrix)'
     -r: reference file, string
     -alphas: csv string, valid only for scheme Renyi and Pareto, default 1.0
     -RunType: default 'whole', could be 'simulation' or 'evaluation'
     -std_file: expression variance file, can be used to weight primary input matrix elements


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Karthik Devarajan