hpcNMF is a platform independent software package and does not require any special
libraries for the deployment on desktop computers. It is compatible with
Windows, Linux and Mac operating systems. However, MPI is needed for
hpcNMF to be deployed on computer clusters to leverage the power of
hpcNMF -i input_data_matrix
-s: scheme, 'KL', 'Renyi', 'ED'
-n: update steps, default 2000
-c: repeats, default 20
-k: rank range, default 2-2
-t: clustering target, default 'PATTERN (H matrix)'
-r: reference file, string
-alphas: csv string, valid only for scheme Renyi and Pareto, default 1.0
-RunType: default 'whole', could be 'simulation' or 'evaluation'
-std_file: expression variance file, can be used to weight primary input matrix elements